CSE 891: Digital Evolution and Biocomplexity

This wiki is for sharing information in the Spring 2009 semester course CSE 891 at Michigan State University.  Some basic information is already here, but we'll add more as needed.

Some quick Avida links:

• Using Avida
• Compiling Avida on the CSE Linux machines
• Adding a New Instruction and a new configuration option.
• Adding a New Task.
• Adding an Analyze Command.
• Turning on Organism Facing.
• Using Demes in Avida.
• Creating Avida Grid Movies.

Information Theory

• Wikipedia has a good primer on Information Theory
• Info Theory Equations
• Using information theory to understand: RNA folding exercise.

Full Avida documentation can be found here.

Feel free to add to these pages with anything you want to share...